Publications

Angerer, L.M., Yaguchi, S. Angerer, R.C. and Burke, R.D. (2011) The evolution of nervous system patterning: Insights from sea urchin development, Development (In Press).
Lammerts van Bueren, A., Ficko-Blean, E., Pluvinage, B., Hehemann, J. H., Higgins, M. A., Deng, L., Ogunniyi, A. D., Stroeher, U. H., El Warry, N., Burke, R. D., Czjzek, M., Paton, J. C., Vocadlo, D. J., and Boraston, A. B. (2011) The conformation and function of a multimodular glycogen-degrading pneumococcal virulence factor, Structure 19, 640-651.
Burke, R. D. (2011) Deuterostome neuroanatomy and the body plan paradox, Evol Dev 13, 110-115.
Zito, F., Burke, R. D., and Matranga, V. (2010) Pl-nectin, a discoidin family member, is a ligand for betaC integrins in the sea urchin embryo, Matrix Biol 29, 341-345.
Yaguchi, S., Yaguchi, J., Angerer, R. C., Angerer, L. M., and Burke, R. D. (2010) TGFbeta signaling positions the ciliary band and patterns neurons in the sea urchin embryo, Dev Biol 347, 71-81.
Jackson, D. J., Meyer, N. P., Seaver, E., Pang, K., McDougall, C., Moy, V. N., Gordon, K., Degnan, B. M., Martindale, M. Q., Burke, R. D., and Peterson, K. J. (2010) Developmental expression of COE across the Metazoa supports a conserved role in neuronal cell-type specification and mesodermal development, Dev Genes Evol 220, 221-234.
Schmerk, C. L., Duplantis, B. N., Wang, D., Burke, R. D., Chou, A. Y., Elkins, K. L., Ludu, J. S., and Nano, F. E. (2009) Characterization of the pathogenicity island protein PdpA and its role in the virulence of Francisella novicida, Microbiology 155, 1489-1497.
Sakaki, K., Foulds, I. G., Liu, W., Dechev, N., Burke, R. D., and Park, E. J. (2009) RoboSCell: an automated single cell arraying and analysis instrument, Biomed Microdevices 11, 1317-1330.
Sakaki, K., Dechev, N., Burke, R. D., and Park, E. J. (2009) Development of an autonomous biological cell manipulator with single-cell electroporation and visual servoing capabilities, IEEE Trans Biomed Eng 56, 2064-2074.
Higgins, M. A., Whitworth, G. E., El Warry, N., Randriantsoa, M., Samain, E., Burke, R. D., Vocadlo, D. J., and Boraston, A. B. (2009) Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases, J Biol Chem 284, 26161-26173.
Dupont, S., Thorndyke, W., Thorndyke, M. C., and Burke, R. D. (2009) Neural development of the brittlestar Amphiura filiformis, Dev Genes Evol 219, 159-166.
Wilson, M. D., Wang, D., Wagner, R., Breyssens, H., Gertsenstein, M., Lobe, C., Lu, X., Nagy, A., Burke, R. D., Koop, B. F., and Howard, P. L. (2008) ARS2 is a conserved eukaryotic gene essential for early mammalian development, Mol Cell Biol 28, 1503-1514.
Murabe, N., Hatoyama, H., Hase, S., Komatsu, M., Burke, R. D., Kaneko, H., and Nakajima, Y. (2008) Neural architecture of the brachiolaria larva of the starfish, Asterina pectinifera, J Comp Neurol 509, 271-282.
Mellott, D. O., and Burke, R. D. (2008) Divergent roles for Eph and ephrin in avian cranial neural crest, BMC Dev Biol 8, 56.
Mellott, D. O., and Burke, R. D. (2008) The molecular phylogeny of eph receptors and ephrin ligands, BMC Cell Biol 9, 27.
Funk, V. A., Olafson, R. W., Raap, M., Smith, D., Aitken, L., Haddow, J. D., Wang, D., Dawson-Coates, J. A., Burke, R. D., and Miller, K. M. (2008) Identification, characterization and deduced amino acid sequence of the dominant protease from Kudoa paniformis and K. thyrsites: a unique cytoplasmic cysteine protease, Comp Biochem Physiol B Biochem Mol Biol 149, 477-489.
Yaguchi, S., Yaguchi, J., and Burke, R. D. (2007) Sp-Smad2/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo, Dev Biol 302, 494-503.
van Bueren, A. L., Higgins, M., Wang, D., Burke, R. D., and Boraston, A. B. (2007) Identification and structural basis of binding to host lung glycogen by streptococcal virulence factors, Nat Struct Mol Biol 14, 76-84.
Poustka, A. J., Kuhn, A., Groth, D., Weise, V., Yaguchi, S., Burke, R. D., Herwig, R., Lehrach, H., and Panopoulou, G. (2007) A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks, Genome Biol 8, R85.
Byrne, M., Nakajima, Y., Chee, F. C., and Burke, R. D. (2007) Apical organs in echinoderm larvae: insights into larval evolution in the Ambulacraria, Evol Dev 9, 432-445.
Butler-Cole, C., Wagner, M. J., Da Silva, M., Brown, G. D., Burke, R. D., and Upton, C. (2007) An ectromelia virus profilin homolog interacts with cellular tropomyosin and viral A-type inclusion protein, Virol J 4, 76.
Bishop, C. D., and Burke, R. D. (2007) Ontogeny of the holothurian larval nervous system: evolution of larval forms, Dev Genes Evol 217, 585-592.
Yaguchi, S., Yaguchi, J., and Burke, R. D. (2006) Specification of ectoderm restricts the size of the animal plate and patterns neurogenesis in sea urchin embryos, Development 133, 2337-2346.
Yaguchi, S., Nakajima, Y., Wang, D., and Burke, R. D. (2006) Embryonic expression of engrailed in sea urchins, Gene Expr Patterns 6, 566-571.
Whittaker, C. A., Bergeron, K. F., Whittle, J., Brandhorst, B. P., Burke, R. D., and Hynes, R. O. (2006) The echinoderm adhesome, Dev Biol 300, 252-266.
Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Coffman, J. A., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H., et al. (2006) The genome of the sea urchin Strongylocentrotus purpuratus, Science 314, 941-952.
Roux, M. M., Townley, I. K., Raisch, M., Reade, A., Bradham, C., Humphreys, G., Gunaratne, H. J., Killian, C. E., Moy, G., Su, Y. H., Ettensohn, C. A., Wilt, F., Vacquier, V. D., Burke, R. D., Wessel, G., and Foltz, K. R. (2006) A functional genomic and proteomic perspective of sea urchin calcium signaling and egg activation, Dev Biol 300, 416-433.
Nix, E. B., Cheung, K. K., Wang, D., Zhang, N., Burke, R. D., and Nano, F. E. (2006) Virulence of Francisella spp. in chicken embryos, Infect Immun 74, 4809-4816.
Diamente, P. R., Burke, R. D., and van Veggel, F. C. (2006) Bioconjugation of Ln3+-doped LaF3 nanoparticles to avidin, Langmuir 22, 1782-1788.
Burke, R. D., Osborne, L., Wang, D., Murabe, N., Yaguchi, S., and Nakajima, Y. (2006) Neuron-specific expression of a synaptotagmin gene in the sea urchin Strongylocentrotus purpuratus, J Comp Neurol 496, 244-251.
Burke, R. D., Angerer, L. M., Elphick, M. R., Humphrey, G. W., Yaguchi, S., Kiyama, T., Liang, S., Mu, X., Agca, C., Klein, W. H., Brandhorst, B. P., Rowe, M., Wilson, K., Churcher, A. M., Taylor, J. S., Chen, N., Murray, G., Wang, D., Mellott, D., Olinski, R., Hallbook, F., and Thorndyke, M. C. (2006) A genomic view of the sea urchin nervous system, Dev Biol 300, 434-460.
Boraston, A. B., Wang, D., and Burke, R. D. (2006) Blood group antigen recognition by a Streptococcus pneumoniae virulence factor, J Biol Chem 281, 35263-35271.